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Keke and q3 wrap-up

Keke hard at work counting the q3 offspring

Keke hard at work counting the q3 offspring

Keke is a senior Environmental Studies major at Lake Forest College who has been working in the lab for the past semester. For her project, she focused on the maternal plants of qGen_3. In that experiment, we crossed individuals in p1 with pollen collected from plants at Staffanson and Landfill during the summer and planted the seeds from those crosses in the fall. When dissecting the heads, we only selected achenes that we knew had been crossed properly.

This left ray achenes and achenes that may have been contaminated with other pollen, plus any achenes that we missed! Although we didn’t want to plant inviable or contaminated achenes, knowing the fecundity of the maternal plants is an important part of estimating fitness, so we wanted to have accurate achene counts for each mom. This is where Keke comes in. She removed all of the “extra” achenes and counted them, along with the rest of the maternal achenes which had been scanned in the fall.

Keke also analyzed the effect of a new pollen management procedure that we followed for q3. This procedure involved collecting pollen in multiple vials and taking care to only remove a vial from the refrigerator for crossing once. This was in an effort to reduce exposure of pollen to repeated warming and cooling cycles, which we thought might have reduced its viability in q2. Keke assessed the percent of successful crosses in q2 versus q3 and found that the percent of successful crosses increased 5% with the new procedure. Cool!

You can read more about what Keke did this winter and spring in her report, which can be found here:

Keke’s Q3 Report

Thanks Keke and best of luck in all of your future endeavors!

 

Project status update: flowering phenology in the remnants

Beginning in 1996, Team Echinacea has monitored the flowering phenology of Echinacea angustifolia in remnant populations around Solem Township. The number of populations and plants we visit has varied over the years; a summary of which populations were monitored in each year can be found at this link. In 2015, we monitored phenology of 1763 heads on 1384 plants at 27 remnant populations. Whew! That is about 400 more flowering individuals than in 2014 although we monitored the same populations. Populations with big increases in numbers of flowering individuals from last year include Aanenson, East Riley, Landfill, and On 27. At each population, we identify all flowering individuals and track their development over the course of the season, gathering data on start and end dates of flowering for every individual. Flowering began at Loeffler’s Corner on June 23rd and ended at Aanenson on August 19th. We will use this data to describe temporal flowering patterns within and among remnants and relate this to potential for successful mating in populations.

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Blue line segments indicate the period of time that at least one individual was flowering at each population. The numbers to the left of the lines indicate the number of individuals that flowered from each population in 2015. Click to enlarge!

Look here to read previous flog posts about this experiment.

Start year: 1996

Locations: roadsides, railroad rights of way, and nature preserves in and near Solem Township, MN

Overlaps with: mating compatibility in remnants, demography in remnants, phenology in experimental plots

Team members who have worked specifically on this project include: Amber Zahler (2011), Kelly Kapsar (2012), and Sarah Baker (2013), although gathering phenology data was a whole team effort in 2014 and 2015. Flog posts authored by Kelly, Amber, and other team members may provide additional details about day-to-day activities associated with our flowering phenology monitoring project.

Project status update: Phenology in experimental plots

Every year we keep track of flowering phenology in our main experimental plots, exPt1 and exPt2. Summer 2015 was a big year of flowering in both plots, especially in exPt2, where 1233 heads flowered between July 4th and August 26th. ExPt2 was designed especially to study phenology—you can read more about the team’s monitoring of phenology in the 2015 heritability of phenology project status update.

In exPt1, we kept track of 1212 heads on 649 plants (we left out the qGen_a ‘big batch’ cohort). The first head began shedding pollen on July 2nd and the latest bloomer shed pollen on September 2nd.  Peak date in exPt 1 was on July 27th when there were 1034 heads flowering. At the end of the season we harvested the heads and brought them back to the lab, where we will count fruits (achenes) and assess seed set.

Read previous posts about this experiment.

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A plot of the 2015 flowering schedule in experimental plot 1 made with the brand new R package mateable–available now on CRAN!

Each horizontal gray line segment on this plot represents the flowering time of one head. From bottom to top they are sorted by start day. Black dots show the number of heads in flower on each day. The vertical lines show the peak day (solid) and the days when half of the plants have started flowering and half have ended (dashed).

Start year: 2005

Location: Experimental plots 1 and 2

Overlaps with: Heritability of flowering time, common garden experiment, phenology in the remnants

Products: 

These papers report on investigations of flowering phenology of individuals in experimental plot 1 in 2005, 2006, and 2007:

  • Ison, J.L., and S. Wagenius. 2014. Both flowering time and spatial isolation affect reproduction in Echinacea angustifolia. Journal of Ecology 102: 920–929. PDF
  • Ison, J.L., S. Wagenius, D. Reitz., M.V. Ashley. 2014. Mating between Echinacea angustifolia (Asteraceae) individuals increases with their flowering synchrony and spatial proximity. American Journal of Botany 101: 180-189. PDF

 

Project status update: Common garden experiment–1996 cohort

The oldest Echinacea plants in experimental plot 1 will turn 20 this year. They are part of the 1996 cohort, which was planted in a common garden experiment designed to study differences between remnant populations and assess life history traits as they grew. Stuart sampled about 650 seeds (achenes) from eight remnant populations in and near Solem Township, representing the range of modern prairie habitat from small patches along roadsides to a large nature preserve. In 1996, he transplanted seedlings on a 1m x 1m grid, randomly assigning the location of each individual.

Every year, members of Team Echinacea assess survival and measure plant growth and fitness traits including plant status (whether it is flowering or basal), plant height, leaf count, and number of flowering heads. We harvest all flowering heads in the fall and obtain their achene count and seed set in the lab.

Of the original 650 individuals, 304 were alive in 2015. This year, 136 individuals from the 1996 cohort were flowering with a total of 303 heads. At present, these heads are in the lab where they await processing to find their achene count and seed set.  We used 31 plants (45 flowering heads) from the 1996 cohort as maternal plants in crosses for the most recent heritability of fitness experiment (qGen3). We also used five plants from the 1996 cohort (8 heads total) as part of the pollen exclusion and addition experiment. We covered their heads with pollinator exclusion bags for the duration of the season.

Read more posts about this experiment.

Stuart passes out pollen.

Stuart passes out pollen to Gina and Ben for crosses between 1996 cohort plants in the qGen3 experiment

Start year: 1996

Location: Experimental plot 1

Overlaps with: phenology in experimental plots, qGen3, pollen addition/exclusion

Products:

  • See the exPt1 core dataset where yrPlanted == ‘1996’ for 1996 cohort fitness measurements

 

Project status update: mating compatibility in remnants

In 2015, we continued the study of mating compatibility in the remnants that began in 2014. This experiment is designed to assess population level compatibility and to investigate whether difference in flowering phenology and distance between plants predict whether or not a cross will be compatible. We do this by randomly selecting focal plants from remnant populations and then choosing pollen donors which are representative of the ‘extremes’ of these variables–early flowering, late flowering, nearest to focal plant, and furthest from the focal plant.

Bracts are painted to identify the pollen donor for each style of the focal plant that is being crossed

Bracts are painted to identify the pollen donor for each style of the focal plant that is being crossed

This past summer we conducted this study in six of our largest remnant populations with approximately ten focal plants at each for a total of 228 pairwise crosses. Occasionally we were unable to collect pollen from the most ‘extreme’ individuals because they flowered asynchronously with the focal plant, and in those cases we chose the most ‘extreme’ individual available. Excluding all other pollinators, we performed hand-crosses between the focal plants and their pollen donors and assessed style persistence the following day to evaluate the compatibility of each cross.

Read more posts about this experiment here.

Start year: 2014

Location: large remnant populations

Overlaps with: comprehensive compatibility

Products: The 2015 data from this experiment has been combined with the 2014 dataset and awaits analysis.

Team members who have worked on this project include: Danny Hanson (2015), Amy Waananen (2015), and Claire Ellwanger (2014). Flog posts authored by these team members may provide additional detail about day-to-day activities associated with this experiment.

Project Status Update: Fire and flowering in SPP

For her RET project, Lea gathered data to study the relationship between flowering density and seed set. She worked at Staffanson Prairie Preserve, which appears to have higher flowering density in burn years than non-burn years. This year, 2015, was a non-burn year. Lea and Team Echinacea kept track of the style persistence of about 50 individuals for which we have seed set information from prior burn years. These individuals were harvested and their achene count and seed set will be assessed in winter 2016 by Gordon Younkin, an undergraduate intern from Northwestern University. Gordon will work to build a model of seed set in Staffanson in a non-burn year and aims to compare this model to a burn year.

SPP

Site: Staffanson Prairie Preserve

Start year: 1996

Location: Staffanson Prairie Preserve

Overlaps with: phenology in remnants, phen for aii

Products: Lea is developing a dataset and lesson plan for high-school students to compare individual plants’ style persistence in burn years and non-burn years to test hypotheses about seed set in high- and low- flowering density. This lesson will introduce students to R and its use in data management and statistical analysis.

Read other flog posts about this experiment.

Project status update 2015: Heritability of phenology in experimental plot 2

For his REU research project, Will is investigating heritability of flowering phenology in experimental plot 2 (p2), which was planted in 2006 with 3961 individuals selected for extreme (early or late) flowering phenology. This summer Will and Team Echinacea monitored the phenology of all 646 flowering plants (1216 individual heads) in p2, as well as the phenology of their parents in p1. Flowering in p2 began on the 4th of July and ended on August 26th. The peak day of flowering was July 27th when 1018 heads were flowering. The average duration of flowering for a head was 12.1 days. It was a huge year for flowering in p2 with nearly 5 times more heads than 2014 and over 16 times more than 2013. Will is comparing the flowering schedules of the p2 plants with the 2005 phenology records of their parents. As the plants in p2 mature, and perhaps flower more frequently, we will continue to gather data on family lines of Echinacea to discern the genetic component of their flowering phenology.

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Many flags indicate many flowering plants in experimental plot 2

Start year: 2006

Location: Experimental plot 2 (Hegg Lake WMA)

Overlaps with: phenology in experimental plots

Products: The 2015 phenology records from p2 will be added to the existing multi-year ExPt2 phenology dataset. Will is using tools from the R package echPhenology  developed by Team Echinacea to analyze and produce visualizations of the flowering schedule observed in p2. He plans to present his findings at a conference in spring or summer 2016.

2015 flowering schedule of all heads in p2: First day of flowering was July 4th, peak was July 27th, and the last day was August 26th.

 

 

Read previous posts about this experiment.

 

 

Peeking at p1 phenology

Some observations about phenology in p1: the peak day of flowering seems to vary quite a bit from year to year. In 2007, peak was the earliest observed, on July 3 (!) and in 2008, 2013, and 2015 the peak was latest, on July 27. Curiously enough, 2008, 2013, and 2015 were all burn years. But then again, so was 2006. Hopefully we’ll be looking into this dataset more closely this year. Stay tuned for updates!

Year Peak
2005 12-Jul
2006 12-Jul
2007 3-Jul
2008 27-Jul
2009 14-Jul
2011 24-Jul
2012 4-Jul
2013 27-Jul
2014 19-Jul
2015 27-Jul

September 27: prep for field and lab work

Now that Danny and I are getting settled in at the lab, it’s time to head back to the field! Gretel, Stuart, Danny, and I will be heading out of Chicago on Monday afternoon back to Douglas County for the next week. We spent some time last Friday getting prepared for all of the remaining fieldwork, which includes things like removing flags, re-rechecking demo, and (hopefully!) burning the p8 plot, where the q3 experiment will be planted. We also began making plans for the lab in the coming year–there will be this year’s harvest to process, papers to write, students to mentor, along with improvements we hope to make on the project like a new data entry system to replace the beloved but frail Visors. We talked about who is going to do what and how we’re going to coordinate getting it all done! Rest assured, dear reader, that it will involve to-do lists and technology specially designed to maximize our productivity. Stay tuned as Team Echinacea returns to Minnesota for a busy week of fun and fieldwork!

See ya Lake Mich

See ya Lake Mich

10 Sept 2015: A photo-journey

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Smiles to begin the day!

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See ya!

 

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Recruitment plot, ahoy!

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Danny and Ali visible in distance

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Captain K$ at the helm of USS Echinacea

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~*~ If you fail to prepare, you prepare to fail ~*~ Katherine prepares to harvest!

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Sub-optimal path to P2

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“Make a face describing how you feel right now”

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Rollin’

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Musings from the field: “Do you think that the Vikings colors are purple and yellow because those are common prairie flower colors?”

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“I like the clouds today! They’re very cloud-like!”- KGS

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p2p2p2p2p2p2p2p2p2p2p2

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After yesterday, we thought we were going to need all of the mini-gBags!

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Ali and Danny or Team Pallida in disguise?

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Yessir yessir three bags full!

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Yippee done before lunch!

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The Pouch-Scarf: the field-fashion trend that’s sweeping the nation!

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It’s like the cover of abbey road except that there’s only two of them, it’s close up, and they’re in the prairie

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Ayooooo

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Pistachio!

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“It’s the summer of mini-wheats and I’ve never been happier” – KGS

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Today several of us learned that “LetNo” is short for “letter-number”

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Teamwork making the dream work!

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Paper data sheets lost today: 0!

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Don’t ask Ali how she feels about the Olympics

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“Wow!! Look at the subtle gradation of color in this grass! It’s so beautiful!”

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Hard times

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Loyal follower

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K$ saves the day

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Danny “Banana” Hanson drives the tractor back to Town Hall at the end of the day