Things are movin’ and groovin’ in the lab at the Chicago Botanic Garden!
Now that we’ve wrapped up remnant Echinacea, it’s time to reenter common garden territory. Ah, sweet sweet common garden, where all plants exist neatly* on a grid unlike the unruly remnants.
One of the main things we’ve been tackling is cleaning the 2022 common garden heads. There are 2,116 heads to be cleaned and we’ve already cleaned 561 (or ~27%) of them! Wow, amazing progress! The only remaining and 3 additional bags from 2020. Once those are done, we’re caught up from the backlog that COVID augmented. As for other steps in the ACE process…
Volunteers and students cleaning way!
After cleaning comes rechecking, and we’ve had students working on rechecking Echinacea heads from experimental plot 1 in 2019 and 2020. Once these have been rechecked, we’ve got scan-master volunteer Marty prepare our achenes for uploading to the ACE website!
Our volunteers have also been catching us up on counting from 2017 through 2019 to get data ready for Wyatt’s masters thesis! I won’t spoil what she’s investigating, but just know it’s a burning question that I’m stoked about!
Alex and I have also been attempting to clean up the Cheerios boxes that line our lab window. These boxes contain achenes from the past 20 years and many different experiments, all at different stages of the ACE process. Volunteers have started assembling some of the achenes into x-ray sheets for the years 2017 and 2018.
We also had Priti help us inventory boxes from 2016. We took seeds out of these boxes for our seed addition experiment, but were unsure what achenes actually remained. These seeds did not germinate, so we will put them in storage. However, we have other seeds that are still viable, so we are hoping to freeze them and put them in the seed bank here at CBG!
Priti with all the boxes!
We’re hoping to keep moving forward this spring with all steps of the ACE process, and create an efficient system for taking data off the ACE counting and classifying website!
*it would be neatly if it weren’t for those meddling rogue plants!
Every year since 1996, Team Echinacea members record flowering phenology, taking measuring data and harvest heads of thousands of Echinacea angustifolia plants in common garden experiments. These experimental plots are prairie restorations and abandoned agriculture fields that are managed as grassland habitat. Some plots have multiple ongoing experiments within. Currently, the Echinacea Project currently has 10 established experimental plots.
This project status report will contain updates on experimental plots experimental plots 1, 2, 4, 5 and 8. Reports for the remaining experimental plots can be found on separate posts including Amy Dykstra’s plot (exPt03), the hybrid plots (exPt06, exPt07, exPt09), and the West Central Area common garden (exPt10).
Jo, Emma, Kennedy and Sophia measuring in the picturesque views of exPt02.
exPt01: Experimental plot 1 was first planted in 1996 (cleverly termed the 1996 cohort), and has been planted with nine other experiments in subsequent years, with the most recent planting being Amy Waananen’s inter-remnant crosses. It is the largest of the experimental plots, with over 10,000 planted positions; experiments in the plot include testing fitness differences between remnants (1996, 1997, 1999), quantifying effects of inbreeding (inb1, inb2), and assessing quantitative genetic variation (qgen1). There are also a number of smaller experiments in it, including fitness of Hesperostipa spartea, aphid addition and exclusion, and pollen addition and exclusion (the latter two experiments were continued the summer of 2022 and will have separate update posts). In 2022, we visited 7,273 of the original 10,673 positions planted and found 2,985 alive. Only 1,111 plants were classified as “flowering” in exPt01 this year. This is a drastic increase from the mere 79 plants that flowered in summer 2021– coincidentally, the plot was burned in the spring prior to summer 2022 and not prior to summer 2021. In summer 2022, we harvested 1,588 total Echinacea heads in exPt01. No additional staples were added to the experimental plot this year.
Some numbers for experiments within exPt01
Inb1: The INB1 experiment investigates the relationship between inbreeding level and fitness in Echinacea angustifolia. Each plant in experiment INB1 originates from one of three cross types, depending on the relatedness of the parents: between maternal half siblings; between plants from the same remnant, but not sharing a maternal or paternal parent; and between individuals from different remnants. All individuals were planted in 2001.We continued to measure fitness and flowering phenology in these plants. In 2022, of the original 557 plants in INB1, 92were still alive. Of the plants that were alive this year, 40 of them were flowering; this is a drastic difference from summer of 2021 where only one of the plants was flowering.
qgen: The qGen1 (quantitative genetics) experiment in p1 was designed to quantify the heritability of traits in Echinacea angustifolia. We are especially interested in Darwinian fitness. Could fitness be heritable? During the summer of 2002 we crossed plants from the 1996 & 1997 cohorts of exPt01. We harvested heads, dissected achenes, and germinated seeds over the winter. In the spring of 2003 we planted the resulting 4468 seedlings (this great number gave rise to this experiment’s nickname “big batch”). 1,467 plants in qGen1 were alive in 2022. Of those plants, 592 flowered this summer.
Other plots:
exPt02: To examine the role flowering phenology plays in the reproduction of Echinacea angustifolia, Jennifer Ison planted this plot in 2006 with 3,961 individuals selected for extreme (early or late) flowering timing, or phenology. Using this phenological data, we explore how flowering phenology influences reproductive fitness and estimate the heritability of flowering time in E. angustifolia. In the summer of 2022, we visited 1,856 positions of the 3,961 positions originally planted. We measured 1,438 living plants, of which 651 were flowering, with a total of 1,168 flowering heads. In the fall, we harvested 558 heads from exPt02. We began harvesting on August 10th and completed harvesting on September 12th. The large difference between the number of heads and the number harvested has to do with high levels of seed predation, mainly by ground squirrels. This year, Will, Jennifer, and other members of Team Echinacea published a paper in the American Journal of Botany using data from exPt02 – check it out here! Location: Hegg Lake WMA
exPt04: Experimental plot 4 was planted to gauge whether Echinacea from small remnant populations could be genetically rescued via an outcross to larger, more genetically diverse populations. Caroline Ridley and other members planted this plot in 2008. We did not visit exPt04 this year. Location: Hegg Lake WMA
exPt05: The only experimental plot planted at Staffanson Prairie Preserve (SPP), exPt05, was planted to compare progeny of maternal plants from burned and unburned sections of SPP. There were 2800 plants planted originally, but high mortality made it impractical to visit the plot row-by-row. Now, we and treat the plot like demography. We use our survey-grade GPS to find plants in exPt05 that have previously flowered and add more plants to the stake file if new plants in the plot flower. In 2022 we found 11 living plants, four of which were flowering! There were two heads that should’ve been harvested, but Alex and I forgot to harvest them (oops). Location: Staffanson Prairie Preserve
exPt08: Team Echinacea established quantitative genetics experiments to quantify additive genetic variance of fitness in Echinacea, with the idea that we can estimate evolutionary potential of study populations. The maternal parents of qGen2 and qGen3 are plants in the 1996, 1997, and 1999 cohorts. These plants were crossed with pollen from plants in remnants to produce seed for qGen2 and qGen3, which now inhabit exPt08. Originally, 12,813 seeds were sown in the common garden. Seeds from the same cross (shared maternal and paternal plants) were sown in meter-long segments between nails. A total of 3,253 seedlings were originally found, but only 363 plants were found alive in 2022. There were 14 flowering plants in 2022, and 15 heads. On a side note, 3 additional flowering plants were found in t-plot, but the heads were eaten before we could harvest any of them. Location: Wagenius property
Start year: Differs between experiment, see above. First ever experimental plot was in 1996.
Location: Differs between experiment, see above.
Overlaps with: …everything!
Data collected: Raw measuring data can be found in cgData repository. Processed data will be eventually uploaded to SQL database. Currently, SQL database has measuring data up until 2021.
Samples or specimens collected: See above for total harvested heads in each plot.
Products: Many publications and independent projects.
Harvesting Echinacea heads in the common garden experiments this fall was quite the adventure! During the last week in June, the crew got a taste of harvesting when decapitating non-native Echinacea pallida at Hegg before they could produce seeds. Lobbing off Echinacea heads with wild abandon was quite the thrill after spending a month conscientiously navigating the common gardens and measuring plants with care. In total, we cut approximately 824 heads off of 224 flowering pallida plants.
To harvest or not to harvest? Here is Daytona before removing a pallida head.
The field crew started harvesting heads to be cleaned in exPt02 on August 10th. Our final day of harvesting in exPt02 was September 12th, and during that month we harvested exactly 480 Echinacea heads. Our bountiful harvest in exPt02 was thwarted by the local population of thirteen-lined ground squirrels. Many of this summer’s field team recounts witnessing these rodents ruthlessly rip the head off an Echinacea, look them straight in the eye, and run away. In the end, our 480 heads accounted for only 41% of the heads we planned on harvesting prior to the squirrel shenanigans.
This was a typical view while harvesting in exPt01! So much tall Sorghastrum and Andropogon at eye level.
We also harvested heads in some sites with fewer flowering Echinacea. In exPt08, we harvested 8 heads, and there were three flowering plants in t-plot that may have succumbed to the ground squirrels before we could harvest them. In exPt07 and exPt09, we harvested a combined total of 130 heads. The mysterious exPt05, which required a GPS to be found at Staffanson Prairie, had 4 flowering plants with 2 heads that should’ve been harvested, but didn’t (oops!).
The harvest of our largest experimental plot, exPt01, began on Aug 30th. The exPt01 madness did not end until our final four heads were harvested on October 10th by Gretel and Stuart, which is the latest harvest recorded in Echinacea Project history! The grand total for number of heads harvested in exPt01 was a whopping 1,494 heads.
Manogya hard at work in exPt01 (photo credits to Alex).Teamwork makes the dream work (another great photo from Alex)!
Between all of our common garden experiments, we harvested a total of 2,112 heads!
Last Friday (June 15th), the crew began measuring Echinacea in our largest experimental plot, P1! This plot has 10,673 positions that we visit during the summer, so it is no small task. We had 4 teams measuring for about 3.5 hours and visited about 1,471 positions (13.7% of the entire plot!). Above is a map indicating our progress, with purple representing the segments completed.
Attached is a csv containing the coordinates for parasitic plantings in exPt01. ID is a unique ID to a Row x Position combination, Row is the row in exPt01 (starts at row 13 and increases by 5), Position is the position in exPt01 (starts at 861.85 and increases by 5), Treatment is what was placed there (seeds, Comandra, Pedicularis, or C + P which is Comandra and Pedicularis), siteOne is where the first plant planted came from and siteTwo is where Pedicularis came from if Comandra and Pedicularis were both planted.
Since 1996, members of Team Echinacea have walked, crawled, and ~sometimes~ run next to rows of Echinacea angustifolia planted in common garden experiments. Although protocol varies depending on the experimental plot, every year team members record flowering phenology data, measuring data, and harvest the heads of the thousands of plants we have in common garden experiments.
Note that these experiments are not really gardens. “Common garden” refers to the experimental design. Most of our experimental plots are prairie restorations, a few are abandoned ag fields that are manged as grassland habitat. Some plots have multiple experiments within. The Echinacea Project currently has 10 established experimental plots:
exPts01-10. To avoid repetitiveness of reports on yearly phenology, measuring, and harvesting, this project status report will include updates on all experimental plots 1, 4, 5, and 8. Reports for the others will be elsewhere: Jennifer’s plot (exPt02) Amy Dykstra’s plot (exPt03), the hybrid plots (exPt06, exPt07, exPt09), and the West Central Area common garden (exPt10).
exPt01: Experimental plot 1 was first planted in 1996 (cleverly termed the 1996 cohort), and has been planted with nine other experiments in subsequent years, with the most recent planting being Amy Waananen’s inter-remnant crosses. It is the largest of the experimental plots, with over 10,000 planted positions; experiments in the plot include testing fitness differences between remnants (1996, 1997, 1999), quantifying effects of inbreeding (inb1, inb2), and assessing quantitative genetic variation (qgen1). There are also a number of smaller experiments in it, including fitness of Hesperostipa spartea, aphid addition and exclusion, and pollen addition and exclusion. In 2021, we visited 6,673 of the original 10,673 planted and found 3,085 alive. Only 79 plants were classified as “flowering” in exPt01 this year. This is a drastic decrease from the 484 plants that flowered in summer 2020– perhaps it is a testament to the benefits of controlled burning (we burned in spring 2020 but not in 2021). In summer 2021, we harvested 77 total Echinacea heads in exPt01 (we have not finished the inventory process). In the fall, we added 403 staples to positions where plants were gone for three straight years. We also converted the flaple>s (pin flags bent in half in spots where we ran out of staples) into regular old staples. There are no more flaples in p1!
exPt04: Experimental plot 4 was planted to gauge whether Echinacea from small remnant populations could be genetically rescued via an outcross to larger, more genetically diverse populations. Caroline Ridley and other members planted this plot in 2008. We did not measure exPt04 this year, but there were no flowering plants. Location: Hegg Lake WMA
exPt05: The only experimental plot planted at Staffanson Prairie Preserve (SPP), exPt05, was planted to compare progeny of maternal plants from burned and unburned sections of SPP. There were 2800 plants planted originally, but high mortality made it impractical to visit the plot row-by-row. Now, we and treat the plot like demography. We use our survey-grade GPS to find plants in exPt05 that have previously flowered and add more plants to the stake file if new plants in the plot flower. In 2021 we found 11 living plants, three of which were flowering! There was only twohead to collect, one head was toppled. Location: Staffanson Prairie Preserve
exPt08: Team Echinacea established quantitative genetics experiments to quantify additive genetic variance of fitness in Echinacea, with the idea that we can estimate evolutionary potential of study populations. The maternal parents of qGen2 and qGen3 are plants in the 1996, 1997, and 1999 cohorts. These plants were crossed with pollen from plants in remnants to produce seed for qGen2 and qGen3, which now inhabit exPt08. Originally, 12,813 seeds were sown in the common garden. Seeds from the same cross (shared maternal and paternal plants) were sown in meter-long segments between nails. A total of 3,253 seedlings were originally found, but only 443 plants were found alive in 2021. There were 28 flowering plants in 2021, and 32 heads. This is the most flowering heads in p8 we have ever seen, the first year plants flowered in p8 was 2019 and in 2020 five plants flowered. Note that there were an additional 14 heads collected from transplant plot.
Plot management: To ensure that the common garden environment is as similar as possible to the prairie environment we must actively manage it. This management includes removing foreign species and supplementing with natives. One of our main management methods is through fire. We were able to burn burn p8 this spring and hope to burn p1 this spring. We also collected seed to spread after burns including Schizachyrium scoparium, Bouteloua curtipendula, along with multiple species of Solidago and quite a few Asters.
Asclepias viridiflora in p1: In 2019, plugs of an uncommon prairie milkweed, Asclepias viridiflora, were planted in Experimental plot 1. The purpose of this experiment is to assess the survival and fitness of A. viridiflora. Assessing vitality will also provide a frame of reference for species conservation across modern prairies. We did not assess the A. viridiflora plants this year.
Hesperostipa demography: In 2009 and 2010, porcupine grass (Hesperostipa spartea, a.k.a. “stipa”) was planted in experimental plot 1. In total, 4417 seeds were planted, 1 m apart from each other and all 10 cm north of Echinacea plants. Between 2010 and 2013, each position was checked, and the plant status recorded. Since 2014, we have searched for flowering plants. The data from this summer can be found here cgdata/summer2021/stipaSearch & Dropbox/CGData/Stipa/225_measure/measure2021 in addition to data in these locations there may be paper data sheets that may or may not have been entered yet. These data have not been processed yet.
Inb1: The INB1 experiment investigates the relationship between inbreeding level and fitness in Echinacea angustifolia. Each plant in experiment INB1 originates from one of three cross types, depending on the relatedness of the parents: between maternal half siblings; between plants from the same remnant, but not sharing a maternal or paternal parent; and between individuals from different remnants. We continued to measure fitness and flowering phenology in these plants. In 2021, of the original 557 plants in INB1, 95were still alive. Of the plants that were alive this year, there was only one flowering plant. All individuals were planted in 2001.
qgen: The qGen1 (quantitative genetics) experiment in p1 was designed to quantify the heritability of traits in Echinacea angustifolia. We are especially interested in Darwinian fitness. Could fitness be heritable? During the summer of 2002 we crossed plants from the 1996 & 1997 cohorts of exPt01. We harvested heads, dissected achenes, and germinated seeds over the winter. In the Spring of 2003 we planted the resulting 4468 seedlings (this great number gave rise to this experiment’s nickname “big batch”). In 2021 we assessed survival and fitness measures of the qGen1 plants. 1,519 plants in qGen1 were alive in 2021. Of those, 2.4% flowered in 2021, this is down from 17% last year. All were planted in 2003.
Team moral: Measuring experimental plot 1 is a large task for the team, it takes many days, usually hot days, with a project as large as this it is hard for the team to feel a sense of progress each day. So this year in hopes to keep the team more motivated I(Mia) took two strategies. First, we constructed a physical progress tracker, each square represented a segment in the plot A segment is a section of a row, rows are too big so we break them into sections for ease of measuring. After each day of measuring the team was able to count how many segments they completed and color in each square. The team had fun with their square decoration and got creative with it, there was various themes, fruits, names for peoples last days etc. I also made maps of the plot for each day of measuring that were color coded with what positions have been measured and which ones haven’t. Lastly, I do believe I may have bribed the team with cookies. Having multiple different forms of motivation, really kept the team motived and made the project less daunting. It was also added some excitement into measuring p1, a task that isn’t known for being too exciting.
one of the progress maps purple is done green is not done
one of the progress maps purple is done green is not done
A hearty crew finishing measuring p1 during one of the only rainy days of the season
Progress tracker aka Gopher tunnel of love
For more information on survival in common garden experiments, see this flog post about survival in common gardens.
Start year: Various, see individual listings above. First ever planting was 1996.
Location: Various, see above
Overlaps with: Pretty much everything we do.
Data/ materials collected: Measure data for all plots. All raw measure data available in cgData repository. Processed data should eventually be available in SQL database; ask GK for status of SQL database.
new p79 stake file: Jared made a cleaned up stake file for p7 and p9 that can be found here
p2 stake file/points shot: Amy shot points in p2 this year the points can be found in these 3 jobs
On Friday we finished measuring p1! This was a big push to get it done last week and on Friday it took some expert timing and carful radar studying but we got it done.
Mia (research intern 2020-2022) and the field crew finish measuring experimental plot p1!The waterproof measuring crew
This was a massive feat for the team, and it is super exciting to have it done. There are 10,673 total positions, out of that we found 2,899 basal plants, and 81 flowering plants, we found around 3,523 staples. Thanks to Wesley’s Time Motion Study we know that we spent 198 person hours measuring p1. Below you can see our nice completed map of p1!
Lavender are completed records green is what we have left. positions go N-S rows are W-E
I now have some coding to do to get ready for rechecks but for now the team is having a well-deserved break from measuring p1.
I missed a day but we have made significant progress measuring in the past few days.
On Wednesday (Aug 18) we dropped the number of segments from 32 to 19 in an afternoon with 2 measuring pairs. This was Allie’s last day measuring and we very much missed her today.
Lavender are completed records green is what we have left. positions go N-S rows are W-E
Today (Aug 19) we missed Allie and John but not so much that we couldn’t get anything done. The opposite in fact we got 11 segments done with 2 pairs (5 people) in ~4 hours. We have 8 segments left (woo!), today was very much a penultimate day and tomorrow might be a very big day out in p1 check back tomorrow to find out how we did.
Lavender are completed records green is what we have left. positions go N-S rows are W-E
On Friday the team made great progress measuring, with the help of Gretel (World Record holder for fastest measurer) the team completed 16 segments in ~3 hours with 3 measuring pairs. We now have finished the 99’s both north and south and are off in the Q-gen/big batch experiment. We have a total of 33 segments left out of 141 segments so we are 77% complete! This is amazing and I expect that we will be done before the end of the week.
Lavender is completed records green is what we have left. positions go N-S rows are W-E
Today the team continued working in the 1999 experiments. The measuring in these experiments feels slow because the plants are so densely packed but we got a good chunk done today.
With 3 measuring pairs in ~3 hours we got 12 segments done. The map makes it seem like all of 99north is done but there are actually 3 segments in their that aren’t done. Tomorrow we will finish the 1999 experiment and start Big Batch/Q-Gen which is the big green chunk on the map.
Lavender is completed records green is what we have left. positions go N-S rows are W-E
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