Team Echinacea includes many volunteers who help in the lab. Volunteers contribute to all steps in the ACE process to estimate reproductive effort and outcomes in Echinacea plants from experimental plots and observational studies. During 2024, our 16 volunteers devoted 2192.5 hours to the Echinacea Project! Here is a summary of hours.
initials
hours
aw2
886.0
cak
31.5
cs1
177.0
dstc
71.0
eem
7.0
jln
132.5
jrd
56.0
kja
121.5
ljb
55.0
lc2
47.0
ml
106.0
mnm
24.0
mh2
97.0
mdk
3.0
pp
98.0
scb
280.0
TOTAL
2192.5
We are very thankful for our incredible team of volunteers, the Echinacea Project would not be possible without their hard work and dedication!
Today we’re closing the lab for a two week break. Team Echinacea has had a fun and productive year. We worked really hard in the lab and it’s time to take a well-deserved vacation.
We made great strides in the lab this past year quantifying annual reproductive fitness of plants from many experiments, mostly Echinacea angustifolia–the narrow-leaved coneflower. We estimate fruit counts and seed counts in hundreds of heads we harvest each year using the ACE protocol: cleaning heads, rechecking heads, scanning fruits, counting fruits, taking random samples, x-raying samples of fruits, and classifying radiographs. We were way behind because the lab was closed during the pandemic. We are catching up. In the past two months we moved all heads harvested from one experiment in Sept 2024 all the way through counting all fruits of each head three times. We have a really great data set.
Thank you to the volunteers who contributed so much to our science and conservation endeavors. Thank you, everybody. Enjoy your vacation–you deserve it. I look forward to working with everyone in 2025!
Another batch we’re prioritizing in the lab is the pollinator observation (or polOb) experiment. The goal of this experiment is to learn more about the effects of fire on native bees and their behaviors. We spent time this summer observing Echinacea at 10 paired sites, half of which burned before the 2024 growing season. We then harvested heads from our observation plots for processing in the lab. Because we’re specifically interested in learning about pollination, heads in this group will be streamlined all the way through to the classifying steps to learn about seed set, and we are less concerned about counting. Here’s our progress so far:
We are roughly a third of the way through rechecking. We’ll be pausing work briefly on this batch to get the exPt01 2024 experiment rechecked and uploaded for counting ASAP
NOTE: Funding for this project was provided by the Minnesota Environment and Natural Resources Trust Fund as recommended by the Legislative-Citizen Commission on Minnesota Resources (LCCMR).
We have a few experiments that we’re prioritizing here in the lab. We want to get the heads in these experiments through our ACE process as quickly as possible! One of these experiments is known by many names: q1, qGen, qGen1, big batch, etc. The experiment in question was planted in experimental plot 1 in 2003 and was designed to investigate the heritability of fitness using a quantitative genetics approach. We’re looking to redo the analysis we have on this experiment with several new years of data, including 2024!
This year, very few plants in exPt01 flowered, so all experiments in that plot were lumped into one for ACE processing. I booted up Alex’s ACE progress visualization machine to see what our progress on this batch looks like so far! We only need to get this batch through counting, so we can skip the randomizing/xray/classifying steps.
Finished with cleaning! Rechecking (here cleanQC) is up next.
For our seed addition experiment, we want to know exactly how many seeds we planted in each 1 m transect. Each transect got seeds from one envelope. Before planting, we took xrays of the fruits in the paper envelopes. With minimal processing, the radiographs look good! We have a batch of 251 images to classify. This sounds like a job for Allen Wagner aka “the Count” (of Achene County).
Radiograph of Echinacea fruits in envelope 105.3a /230. Other partial envelopes are visible on the margins.
We used the column blower and other techniques to remove empty fruits. We aimed for about 50 seeds per envelope. How many do you count?
It’s been a busy spring at the lab: 11 volunteers and 6 students from Northwestern and Lake Forest College contributed to the Echinacea Project. We are currently wrapping up before field season starts, and we want to celebrate everything they accomplished in the last few months! Since January, volunteers and students:
On Friday, volunteers Marty and Mike finished cleaning the last batch of heads from the 2018 common garden experiment. Huzzah! The volunteers had been working on the 2018 heads back before the pandemic started, and after a long break, 2018 is finally done. Many thanks to all the volunteers who made this possible, especially the 2021-2022 crew: Allen, Char, Elif, Laura, Luk, Marty, Mike, and Suzanne! Now, we have a lot of rechecking to do.
So far this year, we have sadly not been able to have volunteers in the lab due to the continuing threat of COVID-19. However, over the last few months, we made quite a bit of progress on the remnant Echinacea harvests from 2020 and 2021. In the fall, we had help from volunteers, students from Lake Forest College, and externs from Carleton College. Thanks for your help! In January, Sophia finished cleaning the last head from 2021, which was an exciting accomplishment.
To track our progress in the lab, I created an R script to visualize the various steps of the ACE process for each batch of Echinacea. The figures for rem2020 and rem2021 are included here. Hopefully, this method will work for the cg harvests as well.
Click on the figures to enlarge
The ACE stages are listed along the x-axis, and the number of Echinacea heads are on the y-axis. The light blue shows how much we have completed, and the dark blue shows what remains to be done. The small numbers on each bar indicate the corresponding number of heads, and the width of the bars is roughly proportional to the amount of time each step takes. Along the top, the dates indicate the last day that the totals for each stage were updated.
The script to create these graphs can be found here: echinaceasandbox/oop/trackAceProgressTest.R
Today, the Lake Forest College students returned for their second day at the lab. After cleaning heads last week, they moved on to the next steps of the ACE process today: quality control and scanning. They worked in teams of two, so one group rechecked cleaned heads from rem2020 and rem2021 while the other group scanned the achenes that had passed the quality control step. The students will have a dataset of 40 echinacea heads from 2021, 20 burned and 20 unburned, as well as 40 heads from 2020. They wondered whether the drought this summer affected seed production in echinacea or whether controlled burns influence achene count, and they developed hypotheses to test these questions.
Alondra and Marina do quality control while Maeve and Connor scan achenes
The new x-ray machine also arrived this week! It showed up in an enormous wooden crate, but fortunately the machine itself is not that large. Today, the company representatives gave us a tutorial of how to operate the x-ray. We will need to do some trials to find the best settings and adjust our protocol to the new machine. For example, we will need smaller sheets of paper to fit in the x-ray. Based on today’s test run, it seems that the x-ray can only hold 15 bags of achenes (3 rows of 5) at a time instead of 20 bags (4 rows of 5). However, each image takes only 45 seconds, so hopefully it won’t slow down the process too much. According to the Kubtec website, this model is also good at x-raying explosives, art, and gems, so I guess that might come in handy, too.
Visiting Minnesota to plant seeds last week was a welcome break from sitting at a desk all day. However, we were glad to be back in the lab this week. On Thursday, I finished the inventory of the remnant 2021 heads, so they are now ready to be cleaned by volunteers.
We have a great crew of volunteers this fall. Suzanne wins the award for the longest volunteer record; she has been helping the Echinacea Project since 1999! In contrast, Elif joined the lab in 2019 and is our newest volunteer. So far, all of the volunteers have been cleaning seed heads, an important early step in the ACE workflow. However, many of them specialize in other steps of the process such as quality control, scanning, randomization, weighing, x-raying, counting, or classifying. Once we have made a dent in the backlog of seed heads, the volunteers will be able to diversify and find the steps that they enjoy most.
Marty is an expert at the scanner and x-ray machine
Elif started in 2019 has only cleaned heads so far
Mike has pinned all the bees for the Yellow Pan Trap project
We have yet to discover Luk’s favorite job!
Suzanne specializes at inventory and randomization
Allen is a pro at counting and classifying achenes
Our other project this week was to clean out the freezer in the lab. The freezer mainly contained coolers of empty vials that were used to collect bees for the Yellow Pan Trap (YPT) project. As Mia and I sorted through the vials, we also discovered one cooler that still contained bees! Why were these bees collected? To what project do they belong? Why haven’t they been pinned like all the other bees? According to Detective Stuart, “We have a mystery to solve. First stage is to gather evidence. (Don’t disturb the scene of the crime.)” I followed Stuart’s instructions and returned the cooler to the freezer. After doing some sleuthing, I now suspect that vial GQ-9417 contains YPT specimens that were collected on 31 July 2019. The other vials, however, remain a mystery. If anyone can identify the suspects or has information about the day of the crime, 16 July 2019, please let me know.
