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E. pallida – E. angustifolia cross data

This is my CSV file with information on my pollen crosses between Echinacea pallida and Echinacea angustifolia. It will be used in the analysis of that data.

CSV_recip_Crosses.csv

Orchids

Last week (well, 9 days ago), we headed north to the Crookston area to survey the Western Prairie Fringed Orchid (Platanthera praeclara).
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Gretel is showing everyone what to look for on the plant here.

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Katherine looks over the prairie

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An ant dangles on a thread of spider silk, threatened by the dangerous milkweed

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Here’s what we were actually looking for; the WPFO itself. We found over 1000 plants, way more than last year. All in all, a good day.

Characteristics of a good CSV file for R

Edited by cswitzer. 25 July 2011

Characteristics of a good CSV file:
1. Use database format in Excel

See this example: https://echinaceaproject.org/wp-content/uploads/2011/07/preliminary-analysis-for-calli.html
2. Don’t mix text, integer, or numeric fields (you may enter NA in a numeric field to signify missing data)
3. Remove spaces from excel cells
4. No punctuation in each column name
5. Don’t start a column with a number
6. Column names should be in easily typable format — use capitals at new words and use no spaces (called camelback format)

Mowed

After enjoying the pig races out at the Grant County Fair yesterday, it was back to field work for me today. I biked out to the Hegg Lake Restoration area to discover that my Echinacea pallida site had experienced something that is now common for many prairie remnants – mowing.

Echinacea pallida tagged PAL 1014 before mowing:

Echinacea pallida tagged PAL 1013 after mowing:

Luckily I still have a decent number of crosses, and this just cuts the number I was planning on having a bit shorter. Tomorrow I will begin crosses to use up my remaining supply of Echinacea pallida pollen.

Hot week in review! (18 July 2011)

We accomplished a lot, even thought the weather was super hot! We even started at 7 am to try to beat the heat.

Monday, (July 18, 2011) was amazing in two different ways. The temperature was in the nineties, but the heat index was over 100 F. We worked in the morning, but by 10 am it was heating up. Because of the humidity, our clothes were soaked through by the end of the day. We measured plants in the common garden on Monday afternoon, and helped Katherine set up cages for her aphid experiments.

Here’s a picture of what we felt like on Monday: (Notice the sweat on Josh’s brow as he measures the height, in centimeters, of the Echinacea head.
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Tuesday and Wednesday, we decided not to work outside during the afternoon, so we did morning field work, and then spent time updating the website and computer work during the afternoon.

Here are a few photos of our projects.

1. Callin’s Compatibility Project:
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2. Amber Z’s Phenology Project at Staffanson Prairie Preserve
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3. Lee’s compatibility project with Coreopsis palmata and Heliopsis helianthoides
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4. Katherine’s Experiment with aphids. She set up lots of cages to keep aphids in the right places. Very cool!
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5. Josh is helping other groups and helping with the main projects, because he’s waiting for his Big Bluestem and Indian Grass to grow for his experiment (sorry, no photo).

6. Maria has been collecting Dichanthelium seeds for later experiments. Check out the cool purple flower of Dichanthelium in the picture.
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7. Amber E. has been collecting pollen from Dalea in lots of different remnants (sorry, no picture). Dalea purpurea is a purple flowering legume.
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8. Nicholas is just about to finish all his compatibility experiments between Echinacea angustifolia and Echinacea pallida. To do cross pollination experiments, he first paints the bracts that subtend the styles he will pollinate. Aqua is a easy color to recognize on the bracts.
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On Thursday and Friday, we were able to do more fieldwork in the common garden, even in the afternoon (common garden measurements and phenology).

We also had time to practice taking some photos for the website. The photo below shows Stuart scouting a good location for a website photo.
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Preliminary Analysis for Callin’s Compatibility Experiment

Here is the csv file to use for my compatibility of Echinacea in the remnants.

Preliminary analysis–july 25 2011.csv

Here’s a picture of what we were doing to collect this data!
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Progress on the aphid front

It’s been a busy week for everybody. Plants are blooming, pollen is shedding, and everyone is dashing about madly to catch the field season before it passes us by. I have been running around like a chicken with its head cut off trying to get ready for my aphid addition/exclusion experiment. Everyone has been a wonderful help setting up cages in this sweltering heat. My goal for this week is to finish my first round of experimental treatments: exclusion on Thursday and addition on Friday. Before then, I need to finish setting up nets and teach everyone how to wrangle aphids. Here is a protocol I wrote up to assist the teaching process and the data sheets I mention in the protocol. These are works in progress, so any feedback is appreciated.

AphidExclusionCollectionProtocol2011.doc

aphidexclusion.xls

aphidcollectionoutsideExpt.xls

aphidinfestation.xls
Happy wrangling,

Katherine

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Prairie White Fringed Orchid Search (with Pictures!)

Yesterday we went on a trip to the Crookston area to help Gretel with her White Fringed Orchid search. Here are pictures for your viewing pleasure 🙂

The day started off hot, but not excessively hot…..
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Gretel and Stuart leading the pack.
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Trekking into the prairie.
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We worked in groups of three, with Gretel, Stuart, and Josh visoring in each group and the rest of us flagging and counting.

After working from 9+am to around 12.30pm, it was lunch time!
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We proceeded to have lunch picnic style, but not for long – because a storm was headed our way!
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We quickly headed back to the cars for safety, and watched the awesome storm while eating lunch. Fortunately the storm passed over quickly, and soon the skies were clear again.

Stuart contemplating the skies.
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We went back to work in another section of the prairie for the rest of the afternoon.

Lee searching for orchids. ‘Where forth art thou, white orchid?’
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And there you are! (usually right under my nose)
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Around 4+, we finally finished searching the plots…we were quite exhausted by then…
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but we were done…Victorious Team Echinacea!
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The amazing couple who still had the energy to race back to the cars.
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After that we drove back to Douglas County. Stopped at Fertile, MN for ice cream but sadly they were closed on Saturdays. Also found out that Cafe 116, the dinner place in Fergus Falls we were going to, closes at 6pm on Saturdays. So we had a pretty sumptuous dinner at Don Pablos, a quirky Mexican restaurant in Fergus Falls 🙂
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Reached Hjelm House around 9 or 10pm. That was a long but fun day! 😀

Another Busy Week!

This past week a lot more Echinacea started flowering, which meant we had plenty to do. We located all the Echinacea plants in the Common Garden that will flower this year. There were so many! They seemed to be particularly abundant in the 99 garden.
We also completed some more aphid surveys for Katherine’s project, continued work on the New Media Initiative, and set insect traps for Greg’s project. I really enjoyed taking a quick peek at some of the insects that Greg’s traps caught. I don’t have tons of experience with insects, so I don’t know what genus any of them are yet, but some of them looked pretty nifty. I’m looking forward to finding out more about them.
My own independent project is coming along as well. I’ve been spending quite a bit of time this week working at the dump! For those of you who aren’t familiar with the prairie remnants we’re studying, I should clarify that I’m not actually working in a garbage heap. There are some little hills that haven’t been used for agriculture because they are within the landfill’s property, but they’re not really close to all the trash either. As a result, they are covered in beautiful native prairie species! (And when the wind’s coming from the right direction, it doesn’t even smell bad!) Two of the species I’m studying grow there, Coreopsis palmata
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and Heliopsis helianthoides.
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I’ve started doing pollen crosses, with mixed results. On the Heliopsis, it looks like styles shrivel after receiving outcross pollen (suggesting they have been successfully fertilized), but not after receiving self pollen. I had a harder time seeing what happened to the styles on the Coreopsis I crossed because when I went back to check on them two days later, some of the flower heads had started falling apart. (As Amber Rae put it, “The Coreopsis are losing their heads!”) Stuart says that this is unusual though, so hopefully the heads I use for crosses this coming week won’t fall apart and I’ll be able to get some clearer results.

First round of Dichanthelium collection – done (I think)

Uff da! I believe the first round of Dichanthelium seed collection is done. Thanks to Gretel and everyone who helped. And for all the times you waited for me after 5pm.

Collected seeds from 158 plants from 5 sites – Jul 7 Hegg Lake south of parking lot, Jul 8 near Hegg Lake PHEN plot, Jul 9 Hegg Lake field trip area, Jul 11 (yesterday) Loeffler’s Corner (west) and Staffanson’s (old field).

112 plants had spreading/expanded panicles (not sure what’s the correct term) and 47 were not spreading/erect.

Here’s the maternal lines data from the plants I sampled, if you’re interested:
Dichant_DE_All.xls

I’m planning to return to some of these plants a week (or perhaps a little earlier/later, depending on scheduling) after I first collected the seeds. Hopefully there’s still some seeds left on the culms for me to harvest!

July 14 update: It is actually 158 plants, not 159. Sorry for the arithmetic error! 😛